Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| COAD | rs71484072 | chr10:135230128 | A/G | 3.03E-5 | 252 | 19.32 | 17.27 | 14.73 | KM Plot |
| COAD | rs72829213 | chr6:7864764 | C/T | 4.61E-6 | 259 | 17.77 | 24.5 | 3.52 | KM Plot |
| COAD | rs72829223 | chr6:7875037 | A/G | 4.01E-6 | 261 | 18.08 | 24.5 | 3.52 | KM Plot |
| COAD | rs72829225 | chr6:7876391 | G/T | 3.9E-6 | 261 | 18.07 | 25.98 | 3.52 | KM Plot |
| COAD | rs72918183 | chr6:88866297 | C/T | 9.06E-8 | 256 | 17.8 | 18.5 | 7.48 | KM Plot |
| COAD | rs73305742 | chr12:51542764 | C/T | 2.22E-5 | 259 | 18.9 | 19.95 | 7.87 | KM Plot |
| COAD | rs73305754 | chr12:51551779 | C/T | 1.77E-5 | 264 | 18.9 | 17.37 | 7.87 | KM Plot |
| COAD | rs73305773 | chr12:51564392 | T/C | 1.67E-5 | 264 | 19.32 | 17.37 | 7.87 | KM Plot |
| COAD | rs74505674 | chr6:128850870 | T/A | 3.0E-13 | 258 | 18.07 | 16.37 | 5.3 | KM Plot |
| COAD | rs74765157 | chr22:50546098 | C/T | 5.28E-14 | 264 | 17.37 | 19.52 | 3.07 | KM Plot |
| COAD | rs75326369 | chr5:56275972 | C/G | 1.51E-6 | 257 | 18.1 | 16.47 | 5.2 | KM Plot |
| COAD | rs75418611 | chr1:231945726 | G/C | 4.63E-6 | 257 | 20.13 | 9.57 | 3.17 | KM Plot |
| COAD | rs75422439 | chr9:7319843 | G/A | 0 | 259 | 17.67 | 23.9 | 1.43 | KM Plot |
| COAD | rs76209676 | chr16:75650224 | T/C | 2.96E-6 | 262 | 17.82 | 17.9 | 8.33 | KM Plot |
| COAD | rs76477357 | chr6:128848510 | T/C | 1.53E-13 | 262 | 18.03 | 17.43 | 5.3 | KM Plot |